If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ), 'gf_id' => 'HOM05D000770', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000770' ), 'data_identifier' => 'HOM05D000770', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000770', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '764', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p18620' => 'bna', 'A01p27220' => 'bna', 'A01p27230' => 'bna', 'A01p38750' => 'bna', 'A02p05260' => 'bna', 'A03p09370' => 'bna', 'A03p43000' => 'bna', 'A05p33970' => 'bna', 'A06p01400' => 'bna', 'A08p20480' => 'bna', 'A09p02720' => 'bna', 'A09p20570' => 'bna', 'A09p42130' => 'bna', 'A10p20480' => 'bna', 'Aa31LG10G2150' => 'aar', 'Aa31LG11G10500' => 'aar', 'Aa31LG1G20630' => 'aar', 'Aa31LG5G10070' => 'aar', 'Aa31LG5G3460' => 'aar', 'Aa31LG8G2680' => 'aar', 'Aa31LG8G9370' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.2009' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.729' => 'aag', 'Actinidia04507' => 'ach', 'Actinidia23505' => 'ach', 'Actinidia39451' => 'ach', 'Actinidia39740' => 'ach', 'Actinidia40115' => 'ach', 'Actinidia40154' => 'ach', 'Ah.06g183880' => 'amhyb', 'Ah.09g235660' => 'amhyb', 'Ah.09g235670' => 'amhyb', 'Ah.11g050190' => 'amhyb', 'Ah.13g071790' => 'amhyb', 'Ah.13g074120' => 'amhyb', 'AL1G61280' => 'aly', 'AL3G28000' => 'aly', 'AL3G37190' => 'aly', 'AL5G33450' => 'aly', 'AL6G30560' => 'aly', 'AL7G25320' => 'aly', 'AL8G16320' => 'aly', 'Aqoxy1G02514' => 'aox', 'Aqoxy2G03283' => 'aox', 'Aqoxy2G03468' => 'aox', 'Aqoxy4G01050' => 'aox', 'arahy.Tifrunner.gnm1.ann1.28GU9R' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.34LCL9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.438HD4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6I67ER' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6W7B85' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7X1NZD' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.88LWN2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9PD1H7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AUV3TU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D02NRM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D3G28H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DI4DJ5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.I6EE1A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IA9KE4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KPLK3V' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QT0H2C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RC06K7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.REWU9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RG0P7S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RRD2QF' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S4V2SE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SB181I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2QYCA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U6FHN5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UXK99M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WEAJ9A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X7WTVC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Z8MVM1' => 'arhy', 'AT3G15450' => 'ath', 'AT3G22850' => 'ath', 'AT4G27450' => 'ath', 'AT5G19140' => 'ath', 'AT5G43830' => 'ath', 'ATR0626G322' => 'atr', 'ATR0665G593' => 'atr', 'ATR0680G386' => 'atr', 'ATR0686G056' => 'atr', 'Atru.chr10.1902' => 'acertr', 'Atru.chr10.1932' => 'acertr', 'Atru.chr2.2735' => 'acertr', 'Atru.chr2.2805' => 'acertr', 'Atru.chr4.2335' => 'acertr', 'Atru.chr4.2548' => 'acertr', 'AUR62011968' => 'cqu', 'AUR62014794' => 'cqu', 'AUR62014795' => 'cqu', 'AUR62016981' => 'cqu', 'AUR62016982' => 'cqu', 'AUR62029354' => 'cqu', 'AUR62032280' => 'cqu', 'AUR62034235' => 'cqu', 'AUR62034681' => 'cqu', 'AUR62038057' => 'cqu', 'AUR62038183' => 'cqu', 'AUR62042981' => 'cqu', 'BcaB01g04875' => 'bca', 'BcaB01g05135' => 'bca', 'BcaB01g05293' => 'bca', 'BcaB03g14646' => 'bca', 'BcaB04g19815' => 'bca', 'BcaB04g20925' => 'bca', 'BcaB05g23372' => 'bca', 'BcaB06g29575' => 'bca', 'BcaB06g29578' => 'bca', 'BcaB07g31002' => 'bca', 'BcaB07g33372' => 'bca', 'BcaB08g36598' => 'bca', 'BcaB08g36599' => 'bca', 'BcaC01g02820' => 'bca', 'BcaC01g02921' => 'bca', 'BcaC01g03413' => 'bca', 'BcaC01g03414' => 'bca', 'BcaC02g10890' => 'bca', 'BcaC03g13645' => 'bca', 'BcaC04g18593' => 'bca', 'BcaC04g21900' => 'bca', 'BcaC04g23546' => 'bca', 'BcaC05g27864' => 'bca', 'BcaC05g29010' => 'bca', 'BcaC06g33821' => 'bca', 'BcaC07g38281' => 'bca', 'BcaC08g43479' => 'bca', 'BcaC09g48509' => 'bca', 'BcaC09g51857' => 'bca', 'BcaNung03025' => 'bca', 'BolC1t02307H' => 'bol', 'BolC1t04865H' => 'bol', 'BolC2t06939H' => 'bol', 'BolC3t13559H' => 'bol', 'BolC3t13565H' => 'bol', 'BolC3t17235H' => 'bol', 'BolC3t17550H' => 'bol', 'BolC4t23899H' => 'bol', 'BolC4t26817H' => 'bol', 'BolC4t28275H' => 'bol', 'BolC5t32602H' => 'bol', 'BolC5t33496H' => 'bol', 'BolC5t33858H' => 'bol', 'BolC6t35942H' => 'bol', 'BolC7t44167H' => 'bol', 'BolC8t48705H' => 'bol', 'BolC9t53632H' => 'bol', 'BolC9t55504H' => 'bol', 'BolC9t58575H' => 'bol', 'BraA01t01812Z' => 'bra', 'BraA01t03910Z' => 'bra', 'BraA02t05483Z' => 'bra', 'BraA03t10256Z' => 'bra', 'BraA03t13444Z' => 'bra', 'BraA05t22219Z' => 'bra', 'BraA06t23361Z' => 'bra', 'BraA08t34004Z' => 'bra', 'BraA09t37663Z' => 'bra', 'BraA09t39699Z' => 'bra', 'BraA10t44117Z' => 'bra', 'C01p23640' => 'bna', 'C01p42090' => 'bna', 'C02p10380' => 'bna', 'C03p10850' => 'bna', 'C03p10900' => 'bna', 'C03p52810' => 'bna', 'C03p58360' => 'bna', 'C04p24040' => 'bna', 'C05p38620' => 'bna', 'C05p51720' => 'bna', 'C06p08660' => 'bna', 'C08p10270' => 'bna', 'C09p07190' => 'bna', 'C09p26010' => 'bna', 'C09p52170' => 'bna', 'C09p57100' => 'bna', 'CAN.G1164.17' => 'can', 'CAN.G1164.8' => 'can', 'CAN.G1435.10' => 'can', 'CAN.G289.39' => 'can', 'CAN.G38.1' => 'can', 'CAN.G708.5' => 'can', 'CANSAT35G0325' => 'cansat', 'CANSAT35G0734' => 'cansat', 'CANSAT56G1554' => 'cansat', 'CANSAT78G0996' => 'cansat', 'CANSAT78G2309' => 'cansat', 'CARHR043160' => 'chi', 'CARHR090500' => 'chi', 'CARHR098740' => 'chi', 'CARHR179610' => 'chi', 'CARHR193810' => 'chi', 'CARHR235130' => 'chi', 'Carub.0001s4210' => 'cru', 'Carub.0003s1517' => 'cru', 'Carub.0003s2299' => 'cru', 'Carub.0006s1747' => 'cru', 'Carub.0007s1340' => 'cru', 'Carub.0008s0479' => 'cru', 'Ca_00311_v3' => 'car', 'Ca_00316_v3' => 'car', 'Ca_00635_v3' => 'car', 'Ca_01828_v3' => 'car', 'Ca_10842_v3' => 'car', 'Ca_12163_v3' => 'car', 'Ca_18533_v3' => 'car', 'Ca_21598_v3' => 'car', 'Ca_21623_v3' => 'car', 'Ca_29704_v3' => 'car', 'CBR_g12931' => 'cbr', 'Cc00_g01500' => 'ccan', 'Cc02_g13110' => 'ccan', 'Cc03_g03210' => 'ccan', 'Cc03_g04340' => 'ccan', 'Cc05_g12340' => 'ccan', 'Cc10_g05300' => 'ccan', 'Cc11_g03850' => 'ccan', 'CDE01G0274' => 'cde', 'CDE01G0284' => 'cde', 'CDE02G4771' => 'cde', 'CDE04G0065' => 'cde', 'CDE05G0824' => 'cde', 'CDE06G1619' => 'cde', 'CDE06G1869' => 'cde', 'CDE08G0289' => 'cde', 'CDE08G0548' => 'cde', 'CDE10G0163' => 'cde', 'CDE10G0924' => 'cde', 'CDE11G0388' => 'cde', 'CDE12G0323' => 'cde', 'Cfa000417' => 'cfa', 'Cfa008429' => 'cfa', 'Cfa015595' => 'cfa', 'Cfa020549' => 'cfa', 'Ciclev10005714m.g' => 'ccl', 'Ciclev10005766m.g' => 'ccl', 'Ciclev10009261m.g' => 'ccl', 'Ciclev10016341m.g' => 'ccl', 'Ciclev10018115m.g' => 'ccl', 'CiPaw.01G161000' => 'cil', 'CiPaw.01G194800' => 'cil', 'CiPaw.02G093100' => 'cil', 'CiPaw.02G119900' => 'cil', 'CiPaw.09G057600' => 'cil', 'CiPaw.09G058500' => 'cil', 'CiPaw.11G173100' => 'cil', 'CiPaw.12G120700' => 'cil', 'ClCG01G022830' => 'cla', 'ClCG05G004830' => 'cla', 'ClCG05G005380' => 'cla', 'ClCG06G005850' => 'cla', 'ClCG11G018200' => 'cla', 'COL.COLO4_09118' => 'col', 'COL.COLO4_09431' => 'col', 'COL.COLO4_21573' => 'col', 'COL.COLO4_26623' => 'col', 'COL.COLO4_31492' => 'col', 'COL.COLO4_31499' => 'col', 'COL.COLO4_32838' => 'col', 'Cpa.g.sc1565.1' => 'cpa', 'Cpa.g.sc27.53' => 'cpa', 'Cpa.g.sc27.65' => 'cpa', 'Cpa.g.sc44.127' => 'cpa', 'Cpa.g.sc80.38' => 'cpa', 'Cre16.g680700' => 'cre', 'CsaV3_3G012870' => 'csa', 'CsaV3_3G013630' => 'csa', 'CsaV3_4G033850' => 'csa', 'CsaV3_6G015150' => 'csa', 'CsaV3_6G050010' => 'csa', 'CSS0006409' => 'camsi', 'CSS0007042' => 'camsi', 'CSS0009090' => 'camsi', 'CSS0015887' => 'camsi', 'CSS0017400' => 'camsi', 'CSS0017632' => 'camsi', 'CSS0017813' => 'camsi', 'CSS0018801' => 'camsi', 'CSS0023538' => 'camsi', 'CSS0033615' => 'camsi', 'CSS0034586' => 'camsi', 'CSS0038063' => 'camsi', 'CSS0039078' => 'camsi', 'CSS0042418' => 'camsi', 'CSS0042653' => 'camsi', 'CSS0044697' => 'camsi', 'CSS0047080' => 'camsi', 'DCAR_002365' => 'dca', 'DCAR_004086' => 'dca', 'DCAR_004109' => 'dca', 'DCAR_019544' => 'dca', 'DCAR_020983' => 'dca', 'DCAR_027165' => 'dca', 'DCAR_030602' => 'dca', 'DCAR_030690' => 'dca', 'Dinv04322' => 'din', 'Dinv07550' => 'din', 'Dinv08314' => 'din', 'Dinv38402' => 'din', 'Dinv40539' => 'din', 'Dinv40546' => 'din', 'Dinv44488' => 'din', 'Dinv44579' => 'din', 'Duzib052G0891' => 'dzi', 'Duzib138G1178' => 'dzi', 'Duzib151G0013' => 'dzi', 'Duzib160G0799' => 'dzi', 'Duzib211G0003' => 'dzi', 'Duzib212G0482' => 'dzi', 'Duzib213G0411' => 'dzi', 'Duzib213G1072' => 'dzi', 'Duzib235G0479' => 'dzi', 'Duzib235G1319' => 'dzi', 'Duzib268G1690' => 'dzi', 'ECA234G0723' => 'eca', 'ECA234G2008' => 'eca', 'ECA236G1786' => 'eca', 'ECA240G2056' => 'eca', 'ECA246G0939' => 'eca', 'ECA246G4115' => 'eca', 'ECA248G0535' => 'eca', 'EL10Ac3g06397' => 'bvu', 'EL10Ac3g06503' => 'bvu', 'EL10Ac4g08120' => 'bvu', 'EL10Ac5g10489' => 'bvu', 'EL10Ac8g20349' => 'bvu', 'EL10Ac8g20350' => 'bvu', 'Eucgr.B01123' => 'egr', 'Eucgr.D00640' => 'egr', 'FAN07G0568' => 'fan', 'FAN11G0564' => 'fan', 'FAN11G1308' => 'fan', 'FAN12G2084' => 'fan', 'FAN12G4345' => 'fan', 'FAN16G0519' => 'fan', 'FAN16G1586' => 'fan', 'FAN17G0653' => 'fan', 'FAN17G2356' => 'fan', 'FAN21G1654' => 'fan', 'FAN21G2007' => 'fan', 'FAN22G1124' => 'fan', 'FAN22G2101' => 'fan', 'FAN25G2120' => 'fan', 'FAN25G2849' => 'fan', 'FvH4_3g04880' => 'fve', 'FvH4_3g20560' => 'fve', 'FvH4_4g01560' => 'fve', 'FvH4_4g14740' => 'fve', 'Glyma.04G180700' => 'gma', 'Glyma.07G195300' => 'gma', 'Glyma.07G257700' => 'gma', 'Glyma.08G202500' => 'gma', 'Glyma.10G130052' => 'gma', 'Glyma.10G243300' => 'gma', 'Glyma.12G150500' => 'gma', 'Glyma.12G222400' => 'gma', 'Glyma.13G181000' => 'gma', 'Glyma.13G207800' => 'gma', 'Glyma.13G240300' => 'gma', 'Glyma.13G242100' => 'gma', 'Glyma.13G279200' => 'gma', 'Glyma.15G071300' => 'gma', 'Glyma.15G072400' => 'gma', 'Glyma.15G073100' => 'gma', 'Glyma.15G105100' => 'gma', 'Glyma.17G016300' => 'gma', 'Glyma.20G037000' => 'gma', 'Glyma.20G150900' => 'gma', 'Gohir.1Z049498' => 'ghi', 'Gohir.A01G024100' => 'ghi', 'Gohir.A01G065500' => 'ghi', 'Gohir.A02G029100' => 'ghi', 'Gohir.A08G068700' => 'ghi', 'Gohir.A09G055500' => 'ghi', 'Gohir.A09G057000' => 'ghi', 'Gohir.A09G072100' => 'ghi', 'Gohir.A10G024300' => 'ghi', 'Gohir.A10G024375' => 'ghi', 'Gohir.A10G025000' => 'ghi', 'Gohir.A10G117800' => 'ghi', 'Gohir.D01G022100' => 'ghi', 'Gohir.D01G052900' => 'ghi', 'Gohir.D02G036900' => 'ghi', 'Gohir.D08G077000' => 'ghi', 'Gohir.D09G054400' => 'ghi', 'Gohir.D09G056200' => 'ghi', 'Gohir.D09G071800' => 'ghi', 'Gohir.D10G025000' => 'ghi', 'Gohir.D10G025700' => 'ghi', 'Gohir.D10G149000' => 'ghi', 'Gorai.002G024600' => 'gra', 'Gorai.002G072700' => 'gra', 'Gorai.004G081700' => 'gra', 'Gorai.005G040800' => 'gra', 'Gorai.006G052600' => 'gra', 'Gorai.006G069700' => 'gra', 'Gorai.006G086800' => 'gra', 'Gorai.011G026300' => 'gra', 'Gorai.011G027000' => 'gra', 'Gorai.011G166300' => 'gra', 'GSVIVG01002031001' => 'vvi', 'GSVIVG01002062001' => 'vvi', 'GSVIVG01007435001' => 'vvi', 'GSVIVG01014386001' => 'vvi', 'GSVIVG01017899001' => 'vvi', 'GSVIVG01018050001' => 'vvi', 'GSVIVG01023575001' => 'vvi', 'HanXRQChr01g0003931' => 'han', 'HanXRQChr01g0003941' => 'han', 'HanXRQChr04g0124091' => 'han', 'HanXRQChr08g0234341' => 'han', 'HanXRQChr09g0250351' => 'han', 'HanXRQChr10g0311011' => 'han', 'HanXRQChr12g0359331' => 'han', 'HanXRQChr16g0511211' => 'han', 'HanXRQChr16g0511221' => 'han', 'Haze_00950' => 'cav', 'Haze_06499' => 'cav', 'Haze_09472' => 'cav', 'Haze_09476' => 'cav', 'Haze_11237' => 'cav', 'Hma1.2p1_0126F.1_g059230' => 'hma', 'Hma1.2p1_0540F.1_g174660' => 'hma', 'Hma1.2p1_0549F.1_g177050' => 'hma', 'Hma1.2p1_0732F.1_g210035' => 'hma', 'Hma1.2p1_0881F.1_g231980' => 'hma', 'Hma1.2p1_0881F.1_g232070' => 'hma', 'Hma1.2p1_1311F.1_g274850' => 'hma', 'Hma1.2p1_2553F.1_g324350' => 'hma', 'HPP92_001011' => 'vpl', 'HPP92_003584' => 'vpl', 'HPP92_016093' => 'vpl', 'HPP92_018424' => 'vpl', 'HPP92_028519' => 'vpl', 'HPP92_028528' => 'vpl', 'Hund02866' => 'sun', 'Hund09552' => 'sun', 'Hund12180' => 'sun', 'Hund20643' => 'sun', 'Hund21244' => 'sun', 'Hund22950' => 'sun', 'Lalb_Chr03g0037481' => 'lal', 'Lalb_Chr15g0089861' => 'lal', 'Lalb_Chr15g0089901' => 'lal', 'Lalb_Chr16g0383671' => 'lal', 'Lalb_Chr18g0056131' => 'lal', 'Lalb_Chr18g0059711' => 'lal', 'Lalb_Chr20g0109741' => 'lal', 'Lalb_Chr20g0121941' => 'lal', 'Lalb_Chr21g0304791' => 'lal', 'Lalb_Chr25g0286551' => 'lal', 'Lj1A848T58' => 'lonja', 'Lj1C1207G15' => 'lonja', 'Lj2A1175T52' => 'lonja', 'Lj2A287T52' => 'lonja', 'Lj3A725T49' => 'lonja', 'Lj3g0019739' => 'lja', 'Lj3g0026612' => 'lja', 'Lj4g0005019' => 'lja', 'Lj4g0010886' => 'lja', 'Lj5g0013143' => 'lja', 'Lj5g0024204' => 'lja', 'Lj6A575T19' => 'lonja', 'Lj6A646T81' => 'lonja', 'Lj6g0018408' => 'lja', 'Lj6g0024293' => 'lja', 'Lj6g0026327' => 'lja', 'Lsat_1_v5_gn_1_125781' => 'lsa', 'Lsat_1_v5_gn_1_127780' => 'lsa', 'Lsat_1_v5_gn_1_128160' => 'lsa', 'Lsat_1_v5_gn_1_70041' => 'lsa', 'Lsat_1_v5_gn_2_65641' => 'lsa', 'Lsat_1_v5_gn_4_52481' => 'lsa', 'Lsat_1_v5_gn_5_74680' => 'lsa', 'Lsat_1_v5_gn_5_8421' => 'lsa', 'Lsat_1_v5_gn_7_66020' => 'lsa', 'Manes.03G172750' => 'mes', 'Manes.03G183300' => 'mes', 'Manes.15G024100' => 'mes', 'Manes.15G033200' => 'mes', 'Manes.15G085500' => 'mes', 'Manes.16G025700' => 'mes', 'Manes.17G043500' => 'mes', 'Mapoly0074s0029' => 'mpo', 'MBI10_g16025_MAGBIO' => 'mbi', 'MBI11_g21319_MAGBIO' => 'mbi', 'MBI14_g23617_MAGBIO' => 'mbi', 'MBI17_g29944_MAGBIO' => 'mbi', 'MBI18_g16994_MAGBIO' => 'mbi', 'MBI18_g17011_MAGBIO' => 'mbi', 'MBI19_g05828_MAGBIO' => 'mbi', 'MCO09G129' => 'mco', 'MCO13G554' => 'mco', 'MD00G1095400' => 'mdo', 'MD03G1224100' => 'mdo', 'MD05G1315200' => 'mdo', 'MD10G1296500' => 'mdo', 'MD11G1241900' => 'mdo', 'MD13G1179900' => 'mdo', 'MD13G1185100' => 'mdo', 'MD13G1201000' => 'mdo', 'MD16G1185700' => 'mdo', 'MD16G1200200' => 'mdo', 'Medtr1g019625' => 'mtr', 'Medtr1g041380' => 'mtr', 'Medtr1g102680' => 'mtr', 'Medtr2g013140' => 'mtr', 'Medtr2g022520' => 'mtr', 'Medtr2g079670' => 'mtr', 'Medtr4g088955' => 'mtr', 'Medtr4g117050' => 'mtr', 'Medtr7g059340' => 'mtr', 'MELO3C006497.2' => 'cme', 'MELO3C006558.2' => 'cme', 'MELO3C007297.2' => 'cme', 'MELO3C016712.2' => 'cme', 'MELO3C021407.2' => 'cme', 'Migut.G00299' => 'egut', 'Migut.G00387' => 'egut', 'Migut.M00856' => 'egut', 'Migut.M01150' => 'egut', 'Migut.M01190' => 'egut', 'Migut.N00214' => 'egut', 'MSTRG.10013' => 'ama', 'MSTRG.13185' => 'ama', 'MSTRG.14680' => 'ama', 'MSTRG.4065' => 'ama', 'MSTRG.6846' => 'ama', 'MSTRG.7304' => 'ama', 'MSTRG.9947' => 'ama', 'Nitab4.5_0000630g0010' => 'nta', 'Nitab4.5_0000662g0180' => 'nta', 'Nitab4.5_0001357g0030' => 'nta', 'Nitab4.5_0002066g0110' => 'nta', 'Nitab4.5_0002158g0070' => 'nta', 'Nitab4.5_0002594g0040' => 'nta', 'Nitab4.5_0002652g0010' => 'nta', 'Nitab4.5_0004775g0010' => 'nta', 'Nitab4.5_0007166g0030' => 'nta', 'Nitab4.5_0007855g0050' => 'nta', 'Nitab4.5_0009946g0020' => 'nta', 'Nitab4.5_0011455g0030' => 'nta', 'Nitab4.5_0013186g0010' => 'nta', 'Nn1g02177' => 'nnu', 'Nn1g02466' => 'nnu', 'Nn1g04022' => 'nnu', 'Nn1g06584' => 'nnu', 'Nn1g06607' => 'nnu', 'Nn4g26210' => 'nnu', 'Nn6g34172' => 'nnu', 'Oeu004496.1' => 'oeu', 'Oeu008017.1' => 'oeu', 'Oeu014702.1' => 'oeu', 'Oeu018186.1' => 'oeu', 'Oeu026013.1' => 'oeu', 'Oeu030442.1' => 'oeu', 'Oeu037689.1' => 'oeu', 'Oeu043699.1' => 'oeu', 'Oeu050842.1' => 'oeu', 'Oeu058957.2' => 'oeu', 'Oeu063367.1' => 'oeu', 'Os02g0566000' => 'osa', 'Os03g0744600' => 'osa', 'Os03g0796000' => 'osa', 'Os04g0679400' => 'osa', 'Os11g0147800' => 'osa', 'Os11g0204800' => 'osa', 'Os12g0145100' => 'osa', 'Peaxi162Scf00000g43013' => 'pax', 'Peaxi162Scf00134g02023' => 'pax', 'Peaxi162Scf00316g00330' => 'pax', 'Peaxi162Scf00379g00026' => 'pax', 'Peaxi162Scf00461g00017' => 'pax', 'Peaxi162Scf00947g00118' => 'pax', 'Peaxi162Scf01412g00012' => 'pax', 'PGR004G1356' => 'pgr', 'PGR004G2187' => 'pgr', 'PGR083G2267' => 'pgr', 'PGR142G0293' => 'pgr', 'PGR142G3508' => 'pgr', 'PGSC0003DMG400008988' => 'stu', 'PGSC0003DMG400012822' => 'stu', 'PGSC0003DMG400022388' => 'stu', 'PGSC0003DMG400022437' => 'stu', 'PGSC0003DMG400030170' => 'stu', 'Phvul.003G091800' => 'pvu', 'Phvul.005G083400' => 'pvu', 'Phvul.006G152600' => 'pvu', 'Phvul.006G186600' => 'pvu', 'Phvul.006G187500' => 'pvu', 'Phvul.006G188400' => 'pvu', 'Phvul.007G062400' => 'pvu', 'Potri.001G403000' => 'ptr', 'Potri.004G040600' => 'ptr', 'Potri.008G158400' => 'ptr', 'Potri.008G203400' => 'ptr', 'Potri.010G081600' => 'ptr', 'Potri.011G049900' => 'ptr', 'Potri.011G122100' => 'ptr', 'Pp3c14_4330' => 'ppa', 'Pp3c1_21540' => 'ppa', 'PRCOL_00004680' => 'pco', 'Prupe.1G022400' => 'ppe', 'Prupe.1G152400' => 'ppe', 'Prupe.4G044100' => 'ppe', 'Prupe.4G045300' => 'ppe', 'Prupe.4G185400' => 'ppe', 'Psat1g182440' => 'psa', 'Psat1g206160' => 'psa', 'Psat4g032040' => 'psa', 'Psat5g245320' => 'psa', 'Psat6g103520' => 'psa', 'Psat6g203480' => 'psa', 'Psat7g112760' => 'psa', 'PSO017G1797' => 'pso', 'PSO017G2449' => 'pso', 'PSO170G0517' => 'pso', 'PSO170G1157' => 'pso', 'PSO170G4773' => 'pso', 'PSO210G0002' => 'pso', 'PSO302G0258' => 'pso', 'PSO461G0060' => 'pso', 'PSO675G7755' => 'pso', 'QL03p072730' => 'qlo', 'QL05p039652' => 'qlo', 'QL05p039948' => 'qlo', 'QL06p000840' => 'qlo', 'QL06p003903' => 'qlo', 'QL08p019765' => 'qlo', 'QL12p030815' => 'qlo', 'RcHm_v2.0_Chr4g0388131' => 'rch', 'RcHm_v2.0_Chr4g0417861' => 'rch', 'RcHm_v2.0_Chr5g0008041' => 'rch', 'RcHm_v2.0_Chr5g0008201' => 'rch', 'RcHm_v2.0_Chr5g0034571' => 'rch', 'Rhsim02G0127500' => 'rsi', 'Rhsim02G0128500' => 'rsi', 'Rhsim04G0196800' => 'rsi', 'Rhsim04G0203200' => 'rsi', 'Rhsim06G0196500' => 'rsi', 'Sabra04G0025100' => 'sbr', 'Sabra08G0120700' => 'sbr', 'Sabra08G0158100' => 'sbr', 'Sabra10G0061300' => 'sbr', 'Sabra11G0034300' => 'sbr', 'Sabra11G0108100' => 'sbr', 'Sabra16G0264700' => 'sbr', 'SalBow2G1119' => 'sbo', 'SalBow2G2536' => 'sbo', 'SalBow2G2875' => 'sbo', 'SalBow3G4136' => 'sbo', 'SalBow7G3949' => 'sbo', 'SalBow8G4433' => 'sbo', 'Sc03g0009860' => 'sci', 'Sc05g0001340' => 'sci', 'Sc05g0007800' => 'sci', 'Sc13g0004090' => 'sci', 'Sc19g0003930' => 'sci', 'Sc19g0004480' => 'sci', 'Sed0004757' => 'sed', 'Sed0008049' => 'sed', 'Sed0008529' => 'sed', 'Sed0009004' => 'sed', 'Sed0012833' => 'sed', 'Sed0021321' => 'sed', 'Sed0026656' => 'sed', 'SEGI_01445' => 'sgi', 'SGA_v2.0_scaffold1G00537' => 'sas', 'SGA_v2.0_scaffold39G15321' => 'sas', 'SGA_v2.0_scaffold73G24294' => 'sas', 'SGA_v2.0_scaffold79G25598' => 'sas', 'SGA_v2.0_scaffold7G03975' => 'sas', 'SHI00521' => 'shi', 'SMO119G0096' => 'smo', 'SMO358G0049' => 'smo', 'SMO367G0207' => 'smo', 'Solyc01g079880.3' => 'sly', 'Solyc02g078380.3' => 'sly', 'Solyc02g078500.2' => 'sly', 'Solyc03g006490.3' => 'sly', 'Solyc06g054370.2' => 'sly', 'Solyc08g023495.1' => 'sly', 'Solyc09g082780.3' => 'sly', 'Solyc12g013700.2' => 'sly', 'Sopen01g031640' => 'spe', 'Sopen02g023240' => 'spe', 'Sopen02g023350' => 'spe', 'Sopen03g002490' => 'spe', 'Sopen09g031630' => 'spe', 'Sopen12g007050' => 'spe', 'Sp1g39510' => 'spa', 'Sp2g08630' => 'spa', 'Sp3g13700' => 'spa', 'Sp3g20570' => 'spa', 'Sp6g25220' => 'spa', 'Sp7g25400' => 'spa', 'TAR362G0510' => 'tar', 'TAR365G0175' => 'tar', 'TAR365G1031' => 'tar', 'TAR383G0990' => 'tar', 'TAR626G1074' => 'tar', 'TAR627G0956' => 'tar', 'TAR629G1270' => 'tar', 'TAR636G3576' => 'tar', 'THA.LOC104799919' => 'tha', 'THA.LOC104801111' => 'tha', 'THA.LOC104802754' => 'tha', 'THA.LOC104808575' => 'tha', 'THA.LOC104811858' => 'tha', 'THA.LOC104818061' => 'tha', 'THA.LOC104818800' => 'tha', 'THA.LOC104826065' => 'tha', 'Thecc.01G281800' => 'tca', 'Thecc.04G223700' => 'tca', 'Thecc.04G239500' => 'tca', 'Thecc.06G189500' => 'tca', 'Thecc.06G190600' => 'tca', 'Thecc.07G077300' => 'tca', 'Thhalv10003263m.g' => 'esa', 'Thhalv10011733m.g' => 'esa', 'Thhalv10014561m.g' => 'esa', 'Thhalv10021396m.g' => 'esa', 'Thhalv10021397m.g' => 'esa', 'Thhalv10026074m.g' => 'esa', 'TPR.G12048' => 'tpr', 'TPR.G15801' => 'tpr', 'TPR.G20496' => 'tpr', 'TPR.G26237' => 'tpr', 'TPR.G30676' => 'tpr', 'TPR.G32788' => 'tpr', 'TPR.G36717' => 'tpr', 'TPR.G36838' => 'tpr', 'TWI09G0455' => 'twi', 'TWI09G0955' => 'twi', 'TWI38G0179' => 'twi', 'TWI38G1179' => 'twi', 'TWI39G0499' => 'twi', 'TWI53G0225' => 'twi', 'TWI73G0184' => 'twi', 'TWI73G0311' => 'twi', 'unitig_32.g11736' => 'ugi', 'unitig_578.g15968' => 'ugi', 'unitig_736.g22458' => 'ugi', 'unitig_748.g7308' => 'ugi', 'unitig_748.g8556' => 'ugi', 'unitig_8.g3354' => 'ugi', 'unitig_8.g4553' => 'ugi', 'vmacro08380' => 'vma', 'vmacro11839' => 'vma', 'vmacro11843' => 'vma', 'vmacro15313' => 'vma', 'vmacro15895' => 'vma', 'vmacro19411' => 'vma', 'VMungo0540G0035' => 'vmu', 'VMungo0540G1272' => 'vmu', 'VMungo0540G2278' => 'vmu', 'VMungo0720G1226' => 'vmu', 'VMungo1080G0090' => 'vmu', 'VMungo1215G2820' => 'vmu', 'Zm00001eb056930' => 'zma', 'Zm00001eb060680' => 'zma', 'Zm00001eb196640' => 'zma', 'Zm00001eb433870' => 'zma' ) $gf_id = 'HOM05D000770' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000770' ) $data_identifier = 'HOM05D000770' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 30, 'aar' => (int) 7, 'aag' => (int) 2, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 28, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 6, 'cqu' => (int) 12, 'bca' => (int) 30, 'bol' => (int) 19, 'bra' => (int) 11, 'can' => (int) 6, 'cansat' => (int) 5, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 1, 'ccan' => (int) 7, 'cde' => (int) 13, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 7, 'cpa' => (int) 5, 'cre' => (int) 1, 'csa' => (int) 5, 'camsi' => (int) 17, 'dca' => (int) 8, 'din' => (int) 8, 'dzi' => (int) 11, 'eca' => (int) 7, 'bvu' => (int) 6, 'egr' => (int) 2, 'fan' => (int) 15, 'fve' => (int) 4, 'gma' => (int) 20, 'ghi' => (int) 22, 'gra' => (int) 10, 'vvi' => (int) 7, 'han' => (int) 9, 'cav' => (int) 5, 'hma' => (int) 8, 'vpl' => (int) 6, 'sun' => (int) 6, 'lal' => (int) 10, 'lonja' => (int) 7, 'lja' => (int) 9, 'lsa' => (int) 9, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 7, 'mco' => (int) 2, 'mdo' => (int) 10, 'mtr' => (int) 9, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 7, 'nta' => (int) 13, 'nnu' => (int) 7, 'oeu' => (int) 11, 'osa' => (int) 7, 'pax' => (int) 7, 'pgr' => (int) 5, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 7, 'ppa' => (int) 2, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 7, 'pso' => (int) 9, 'qlo' => (int) 7, 'rch' => (int) 5, 'rsi' => (int) 5, 'sbr' => (int) 7, 'sbo' => (int) 6, 'sci' => (int) 6, 'sed' => (int) 7, 'sgi' => (int) 1, 'sas' => (int) 5, 'shi' => (int) 1, 'smo' => (int) 3, 'sly' => (int) 8, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 8, 'tha' => (int) 8, 'tca' => (int) 6, 'esa' => (int) 6, 'tpr' => (int) 8, 'twi' => (int) 8, 'ugi' => (int) 7, 'vma' => (int) 6, 'vmu' => (int) 6, 'zma' => (int) 4 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb433870' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1